PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009550-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

SRS

Protein Properties

Length: 296aa MW: 32244.8 Da PI: 7.9917

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009550-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	208.7	1.5e-64	88	230	4	151
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsst 89 +++CqdCGnqakkdC+h RCRtCCksrgfdC+thvkstWvpaakrrer +++ a+ + ++kr re ++++s+l++t SMil_00009550-RA_Salv 88 EGINCQDCGNQAKKDCVHLRCRTCCKSRGFDCQTHVKSTWVPAAKRRERLHHQLALGGGD-------NPKRIREInhGAASASTLACT 168 678********************************************88877764333.......333333331133455556666 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqG 151 + +s++ +e ++P+ev+s+avfrcvrvs+vdd+ee++aYqta +igGhvfkGiLydqG SMil_00009550-RA_Salv 169 TSRLPSSTSGFELGHFPAEVNSPAVFRCVRVSAVDDAEEHFAYQTALNIGGHVFKGILYDQG 230 66666677789999*********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.3E-60	89	230	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-27	91	133	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.3E-26	183	230	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MSGFFSLGGK EQQQQDPETD TNNSLFVFKN QEIYNKGFEL WQQYYQLHHQ RLHHDVKDTT 60 TAAADESSTY RSASSGLRGM RQGRSGAEGI NCQDCGNQAK KDCVHLRCRT CCKSRGFDCQ 120 THVKSTWVPA AKRRERLHHQ LALGGGDNPK RIREINHGAA SASTLACTTS RLPSSTSGFE 180 LGHFPAEVNS PAVFRCVRVS AVDDAEEHFA YQTALNIGGH VFKGILYDQG RYGGGESSSG 240 SQQQQPLDLI AAAAASSSAV AATTSSQHIT MLDPSVYPTP LSAFMAGTQF FPPPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022894528.1	1e-135	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9LQZ5	2e-74	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2Z7AIB3	1e-117	A0A2Z7AIB3_9LAMI; SHI-related sequence 7
STRING	EOY14902	1e-104	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	7e-65	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]