PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009565-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 248aa    MW: 27122.7 Da    PI: 6.6125
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009565-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.34.9e-284107199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C+vlr++C ++C+l+p++     p++q++++ +++k++G++ +++l+k+ p + r+++++sl+yeA+ r+  Pv+G+vg++ ++
  SMil_00009565-RA_Salv   4 SCNGCRVLRKGCIENCTLRPCLewiesPESQANATLFLAKFYGRAGLINLIKSGPSHLRPEIFRSLLYEACGRIISPVHGSVGLMCSG 91 
                            6*************************************************************************************** PP

                 DUF260  84 qqqleqlkaelallke 99 
                             +  +q+++e++l+++
  SMil_00009565-RA_Salv  92 DWPRCQAAVEAVLRGA 107
                            *********9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2183109IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCIENCT LRPCLEWIES PESQANATLF LAKFYGRAGL INLIKSGPSH  60
LRPEIFRSLL YEACGRIISP VHGSVGLMCS GDWPRCQAAV EAVLRGAPLM NEDDSASGSV  120
MPLQGCDIRH LSKDSAAACH RRGRARNRSK RSAETHANSF AAELMSESEA KFTITGWDDS  180
GEDRKGFSEE LKRARSHDSY SVETVEPALV NRSHAIKPEL ELGEIALELT LGGPNSVFGV  240
IEISDTEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RNRSKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070804.11e-114LOB domain-containing protein 40-like
SwissprotQ9M8861e-66LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2G9HYG41e-117A0A2G9HYG4_9LAMI; Uncharacterized protein
STRINGMigut.E00341.1.p1e-103(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-67LOB domain-containing protein 41