PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009570-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LSD
Protein Properties Length: 177aa    MW: 18365.3 Da    PI: 8.0892
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009570-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.61.7e-12731125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           C+gCrt+L YP GA++V+Ca+C+ V
  SMil_00009570-RA_Salv  7 CSGCRTVLLYPSGATNVCCAVCNMV 31
                           ***********************98 PP
2zf-LSD140.93.4e-134670125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           CggCrtlL+  rGA+sVRC++C+tV
  SMil_00009570-RA_Salv 46 CGGCRTLLMHARGATSVRCSCCHTV 70
                           ************************9 PP
3zf-LSD148.91e-1587111125
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                            Cg+C+t+L+YP+GApsV+Ca+C+++
  SMil_00009570-RA_Salv  87 CGNCHTMLMYPAGAPSVKCAICHFI 111
                            ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.4E-12434IPR005735Zinc finger, LSD1-type
PfamPF069438.3E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.2E-164373IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-114670IPR005735Zinc finger, LSD1-type
SuperFamilySSF486954.95E-660158IPR011031Multihaem cytochrome
Gene3DG3DSA:3.90.10.109.8E-561131No hitNo description
TIGRFAMsTIGR010535.5E-1384113IPR005735Zinc finger, LSD1-type
PfamPF069433.6E-1487111IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQSQVVCSGC RTVLLYPSGA TNVCCAVCNM VTSVPPPGME MAQLICGGCR TLLMHARGAT  60
SVRCSCCHTV NLVPAAAPPN NVAHVNCGNC HTMLMYPAGA PSVKCAICHF ITNVNMGDTR  120
VPIPVNRPAV NSNSAPTQST STVTTAHSHN QTVVVQNPMT VDESGKLVSN VVVGVTT
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096731.11e-101protein LSD1
RefseqXP_020551343.11e-100uncharacterized protein LOC105167533
SwissprotQ6ASS24e-68LOL3_ORYSJ; Protein LOL3
TrEMBLA0A4D9AS331e-118A0A4D9AS33_SALSN; Uncharacterized protein
STRINGXP_010258673.13e-88(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-56LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]