PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009613-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 315aa    MW: 35320.9 Da    PI: 4.4986
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009613-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.41.3e-111121742486
               trihelix  24 gklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            ++l+   W+evs+k+ +  ++er+ +qC+++++ l+k+ykk+k   +++   +  ++ yf++++
  SMil_00009613-RA_Salv 112 KSLRSEEWQEVSEKVsQGSQIERTDTQCRNRLDTLKKKYKKEKVKLGEG-GSVACKWIYFNKMD 174
                            568899*********555678***************************9.556669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-4107156IPR009057Homeodomain-like
PfamPF138371.0E-14112176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSDGDDNMCL INGGKFPNQD ISYPQNVGKS YIDVEDDEDD DDGGDGVERI GKDDYGGGDE  60
DETTDDDESG DLQRHPKKRK LKTTLLSSYE FAPRLPASSP GSAPRYLKRG MKSLRSEEWQ  120
EVSEKVSQGS QIERTDTQCR NRLDTLKKKY KKEKVKLGEG GSVACKWIYF NKMDTLLSTP  180
PQQAGGLSCG MESGEYVFTN PKVYLNQSNG LDEMRDSPGN SESGGDGEDE SEGLPPQRAT  240
NSLFKMLADS IHKFSEIYQK IELSKRQQMV ELEKMRMDFH RDLDLQKRQI LERGIEKIWQ  300
GDDAENGASP ENVSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072329.11e-115trihelix transcription factor ASIL1-like
RefseqXP_011072330.11e-115trihelix transcription factor ASIL1-like
TrEMBLA0A4D8ZMR41e-123A0A4D8ZMR4_SALSN; Uncharacterized protein
STRINGSolyc12g043090.1.11e-104(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-51Trihelix family protein