PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009644-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 877aa MW: 100240 Da PI: 9.0202

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009644-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.11E-5	27	56	No hit	No description
PROSITE profile	PS50157	11.281	30	57	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0094	30	52	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051973	Biological Process	positive regulation of telomerase activity
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MDGNPSRMET SQQLIILGDD FAQNFKTKSF RCSFCKRGFS NAQALGGHMN IHRKDRAKLR 60 EFSDENLLSL EISRSVNSDD SLPPESLLGE KLSLKNDLSH DGDDQATNLN SCVKAPATEI 120 NDDVESKQLE LKHGELDLEL RLGPEPHHHA KSKPLTLERE SSIRTKLCVY GKTTGIYEFN 180 EDPQGMESAD RNDIMVPASV DNEYIVLEED NGKELVTTTK SPGCSSYITK SKFMSLYTRT 240 TLASFHDALL KLNAAQQDAI RDTGFGNMLD LTVKELPGRL AYWALKSFNP KTCELEISSN 300 FRVKVTVDDV YRAFGLPKGD QKIKRFDRQT SNELFDEWFS LFGVENRDKI KIGLVLNEML 360 HYKNGGIWFK RHFMIAMCLS LFESFSNGTV HPHILYTLFD VENLDKWDWA EYMLRSLVEN 420 RETWRGDDSK MYIGPSLFLV RIEMKRPRFG IGRLREPLKL PERYGYNKKY PMKCQAKIEE 480 LCSDKGEFND NEVMEWENDA HTLGLHRILP LDLNVSPTSS LFLLSLISSD ASVFHPHAWR 540 QEASKLPEVI KLISHILHTS MACNNNELSL VVYRHHQPHM VLSSKTSCRQ IDSPLFLPLR 600 QPPSSFRLPH PLALLHFSVS LLISSPHWRL PLLNLWTHPL LKSSYEFLRI GVEYRLIIAS 660 IISSLFDVAK KGKSRSQRKT FSKGTDTKVK YQLNILPQTE PPMFNGSHAL QKSSRIKCRD 720 LRIVLSLQRP FLLVITFSEM SHLLLFKVAI LTKQGTSKIE ASAQLASFQT SLQPTELSVC 780 AEKEFRQIGS SVVLVMCTRK HTFKFVVHPA TRPARVQSYQ RQPSRAGPAR VKSYPRQPSR 840 DNMPEQIYQR QHARAEISET TKDRVQPETA LPRALPE

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MDGNPSRMET SQQLIILGDD FAQNFKTKSF RCSFCKRGFS NAQALGGHMN IHRKDRAKLR  60
EFSDENLLSL EISRSVNSDD SLPPESLLGE KLSLKNDLSH DGDDQATNLN SCVKAPATEI  120
NDDVESKQLE LKHGELDLEL RLGPEPHHHA KSKPLTLERE SSIRTKLCVY GKTTGIYEFN  180
EDPQGMESAD RNDIMVPASV DNEYIVLEED NGKELVTTTK SPGCSSYITK SKFMSLYTRT  240
TLASFHDALL KLNAAQQDAI RDTGFGNMLD LTVKELPGRL AYWALKSFNP KTCELEISSN  300
FRVKVTVDDV YRAFGLPKGD QKIKRFDRQT SNELFDEWFS LFGVENRDKI KIGLVLNEML  360
HYKNGGIWFK RHFMIAMCLS LFESFSNGTV HPHILYTLFD VENLDKWDWA EYMLRSLVEN  420
RETWRGDDSK MYIGPSLFLV RIEMKRPRFG IGRLREPLKL PERYGYNKKY PMKCQAKIEE  480
LCSDKGEFND NEVMEWENDA HTLGLHRILP LDLNVSPTSS LFLLSLISSD ASVFHPHAWR  540
QEASKLPEVI KLISHILHTS MACNNNELSL VVYRHHQPHM VLSSKTSCRQ IDSPLFLPLR  600
QPPSSFRLPH PLALLHFSVS LLISSPHWRL PLLNLWTHPL LKSSYEFLRI GVEYRLIIAS  660
IISSLFDVAK KGKSRSQRKT FSKGTDTKVK YQLNILPQTE PPMFNGSHAL QKSSRIKCRD  720
LRIVLSLQRP FLLVITFSEM SHLLLFKVAI LTKQGTSKIE ASAQLASFQT SLQPTELSVC  780
AEKEFRQIGS SVVLVMCTRK HTFKFVVHPA TRPARVQSYQ RQPSRAGPAR VKSYPRQPSR  840
DNMPEQIYQR QHARAEISET TKDRVQPETA LPRALPE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	8e-15	C2H2 family protein