PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009727-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 350aa    MW: 39432.2 Da    PI: 8.3277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009727-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.1e-1476127155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  SMil_00009727-RA_Salv  76 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 127
                            79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.00E-1374131No hitNo description
PROSITE profilePS5088815.7275126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1375130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1675141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1176127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-1081132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MALEGVIYQQ DPLIYGCIDY NYCTELGVEE KFNVEQSSAI GYWESSPPLN ATSSAEARRK  60
RRRSKTLKNK EELETQRMTH IAVERNRRRQ MNDYLAVLRS LMPPSYAQRG DQASIVGGAI  120
NFVKELEQLL QFLEAYKLMD RQDMGSSSDK VFRNLLSFPQ YSGKSADIEV TMVETHASIK  180
ILAKKMPKQL LKMVAGFQSF CLNILHLNIT TLDQSVLYSF SVKSTDRADF SALYARVNYA  240
RADFSALDFA ALPILTRADF SALDFAALPI LTRADFAALP ILTRADFSAL PNLARADFSA  300
LNFPLQSRLS RVRVCCQSYI FRQNGDDLQS TAAGVTFSCT ILLPLEFYFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862RKRRR
25863RKRRRS
37687RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575470.0KP257547.1 Salvia miltiorrhiza clone 115 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100183.23e-97LOW QUALITY PROTEIN: transcription factor bHLH96-like
SwissprotQ9C7T44e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0H3YB651e-164A0A0H3YB65_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_010272971.14e-81(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]