PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009758-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 232aa    MW: 24990.9 Da    PI: 6.1434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009758-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-0931522345
                           -HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45
                           +W+ Ia++++ gRt++++k++w+
  SMil_00009758-RA_Salv 31 RWAQIAKHLP-GRTDNEVKNFWN 52
                           5*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-82761IPR009057Homeodomain-like
PfamPF002497.0E-73053IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-123055IPR009057Homeodomain-like
CDDcd001676.40E-73152No hitNo description
PROSITE profilePS500906.5283155IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRNSSTTSPP TAMAAGALSQ DSQVPLSLSH RWAQIAKHLP GRTDNEVKNF WNSSIKKKIM  60
AHHNMSSSAL ISSSNLQHPN LIINNNLIIP NNPQIDQIII PNSQMEQLGF QIDPNLTTYA  120
PNLALIHHTS APNNSLDSSV FDLQSWSSQA LKQDNGAVLG YDGGYDQDSA LLDALMPELA  180
EMAKGLEFGV SANAAEPPQR AALPSSPPEL RRPPSSPPPS SPSRRSFGEG VD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0595211e-109KF059521.1 Salvia miltiorrhiza MYB-related transcription factor (MYB57) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072535.11e-30transcription factor MYB39
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1589635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.13e-15myb domain protein 26