PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009763-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 177aa MW: 19279 Da PI: 5.2077

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009763-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.9	6.3e-42	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r+da+ss+vyeA+ar+r+PvyG++g i +lq+q++ SMil_00009763-RA_Salv 31 PCAACKILRRRCVEKCVLAPYFPPHDPLKFTTAHRVFGASNIIKFLQELPESQRDDAVSSMVYEANARLREPVYGCAGAICQLQKQVN 118 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 +l+++la++++e SMil_00009763-RA_Salv 119 ELHEQLAKAQAE 130 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.011	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-42	31	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MEGSDITATS PSSSSSPPPP PPPQSAVVLS PCAACKILRR RCVEKCVLAP YFPPHDPLKF 60 TTAHRVFGAS NIIKFLQELP ESQRDDAVSS MVYEANARLR EPVYGCAGAI CQLQKQVNEL 120 HEQLAKAQAE LVNVQCQNAN LMAIICMEMS SQNNLAETTS FCDEGNLGFS CEHPLWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	30	136	10	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	30	136	10	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090094.1	1e-83	LOB domain-containing protein 1
Swissprot	Q9LQR0	6e-67	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A4D9BY34	2e-88	A0A4D9BY34_SALSN; Uncharacterized protein
STRING	POPTR_0008s04350.1	9e-80	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-69	LOB domain-containing protein 1