PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009856-RA_Salv
Common NameMYB81
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 235aa    MW: 26770.8 Da    PI: 4.4479
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009856-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-082859132
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                           +g+W+  Ed ll+++++ +G g+W+ +ar  g
  SMil_00009856-RA_Salv 28 KGAWSSHEDSLLINYIAIHGEGRWNFVARDSG 59
                           79***************************987 PP
2Myb_DNA-binding43.66.6e-1459100245
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            g++T eE++++ +++ ++G++ W++Ia+ ++  Rt++++k++w+
  SMil_00009856-RA_Salv  59 GNFTLEEQLRIMELHCLYGNR-WSRIAKFLP-YRTDNEIKNYWR 100
                            89*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.86E-192599IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-82557IPR009057Homeodomain-like
SMARTSM007177.6E-1227105IPR001005SANT/Myb domain
PfamPF002491.0E-52857IPR001005SANT/Myb domain
PROSITE profilePS5129414.81353107IPR017930Myb domain
PfamPF002491.3E-1259101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-1759101IPR009057Homeodomain-like
CDDcd001671.74E-960100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDAINLEATN GILGESDNNK EEILSLKKGA WSSHEDSLLI NYIAIHGEGR WNFVARDSGN  60
FTLEEQLRIM ELHCLYGNRW SRIAKFLPYR TDNEIKNYWR SRVVKHAKQL KYDTNSAELR  120
EFGRDIWLSE KIDASQSQCN TNNVGDEILM NHEEALQMDY WGNLCDNIIP LEIIEANQIA  180
ATDNLSEHSG CGLYSSTLFQ LQSHGLDSVD GSDHNPCCFT CGELSNMLLS DDYLL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594350.0KF059435.1 Salvia miltiorrhiza MYB-related transcription factor (MYB81) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444559.13e-42transcription factor MYB78
RefseqXP_006492457.12e-42transcription factor MYB108
TrEMBLA0A059PRK71e-167A0A059PRK7_SALMI; MYB-related transcription factor
STRINGXP_006492457.18e-42(Citrus sinensis)
STRINGXP_006444559.11e-41(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2471222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.12e-38myb domain protein 2
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]