PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009864-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family YABBY
Protein Properties Length: 126aa    MW: 14108.9 Da    PI: 10.6766
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009864-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY140.91.4e-431610084170
                  YABBY  84 snvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                              +++ ++ s+s+++   s + d e p++ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl
  SMil_00009864-RA_Salv  16 AATTR-DNGSSSNRNRYASLQVDTEQPKMAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 100
                            33444.44445555556699999999**999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.0E-4018100IPR006780YABBY protein
SuperFamilySSF470951.15E-84194IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.3E-54894IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MQLQKQQSLA AAGIDAATTR DNGSSSNRNR YASLQVDTEQ PKMAPIRPPE KRQRVPSAYN  60
RFIKEEIQRI KASNPEISHR EAFSTAAKNW AHFPHIHFGL KMEGNKQAKL DHPVAGEATT  120
QKSLGF
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3727831e-114KT372783.1 Mentha spicata YABBY family protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088989.13e-62putative axial regulator YABBY 2 isoform X1
RefseqXP_011088990.13e-62putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB02e-49YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0X9RCW24e-71A0A0X9RCW2_MENSP; YABBY family protein 2
STRINGMigut.D02379.1.p9e-56(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.19e-52YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]