PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009948-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family DBB
Protein Properties Length: 214aa    MW: 23349.1 Da    PI: 6.3837
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009948-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.8e-07433534
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                            C+ +e+  ++lfC  ++  lC+ C ++ H
  SMil_00009948-RA_Salv  4 LCDVCESAAAILFCAADEASLCRACDDKVH 33
                           7*************************9998 PP
2zf-B_box292.1e-095291237
               zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                           e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  SMil_00009948-RA_Salv 52 EVPRCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtH 91
                           789***************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.855147IPR000315B-box-type zinc finger
SMARTSM003361.5E-7147IPR000315B-box-type zinc finger
PfamPF006436.1E-6341IPR000315B-box-type zinc finger
CDDcd000212.30E-6345No hitNo description
SuperFamilySSF578459.61E-54986No hitNo description
PROSITE profilePS501199.1155196IPR000315B-box-type zinc finger
SMARTSM003361.7E-105196IPR000315B-box-type zinc finger
PfamPF006439.6E-85285IPR000315B-box-type zinc finger
CDDcd000211.55E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EASLCRACDD KVHMCNKLAS RHVRVGLAEP SEVPRCDICE  60
NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGS GSSGEPGSQR  120
LSPGEAKREP SHTTSPLRGN KGVQNHRVSA DLTPDNNTEN DGNMENMFID LNSRPQRMPG  180
QAPTYQGRGD GLGDNSHQSE GVVPNGYFKR EPEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088488.11e-112B-box zinc finger protein 19
RefseqXP_020551620.11e-112B-box zinc finger protein 19
RefseqXP_020551621.11e-112B-box zinc finger protein 19
RefseqXP_020551622.11e-112B-box zinc finger protein 19
SwissprotC0SVM56e-79BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A4D9C3S81e-124A0A4D9C3S8_SALSN; Uncharacterized protein
STRINGMigut.B00176.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-79DBB family protein