PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010114-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 202aa MW: 22574.9 Da PI: 9.0908

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010114-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.5	9.6e-43	56	154	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrrkC ++C++apyfp e+p kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ SMil_00010114-RA_Salv 56 PCAACKFLRRKCLSGCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVI 143 7************************************************************************************* PP DUF260 89 qlkaelallke 99 ql++el+++++ SMil_00010114-RA_Salv 144 QLQKELDATNA 154 ****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.04	55	156	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-42	56	153	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MNEVIFKSCI PIYVLHIHLK QITPPTIVRI TIDIGKMKKE YIYRMASSSS TYSNPPCAAC 60 KFLRRKCLSG CIFAPYFPPE EPTKFANVHK IFGASNVSKL LNEILPHQRE DAVNSLAYEA 120 EARLKDPVYG CVGAISVLQR QVIQLQKELD ATNADLMRYT NQNYGQQRRN MGYGSGVGSY 180 NPNPGYSVAY SYGENPAAHG TN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-63	46	165	1	120	LOB family transfactor Ramosa2.1
5ly0_B	2e-63	46	165	1	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097516.1	5e-87	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	7e-68	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A4D9APX9	1e-88	A0A4D9APX9_SALSN; Uncharacterized protein
STRING	XP_009597524.1	1e-76	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-70	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]