PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010206-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 171aa MW: 18167.9 Da PI: 11.2961

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010206-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	71.3	1.9e-22	42	100	1	59
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredams 59 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll+a p+e+ ++a++ SMil_00010206-RA_Salv 42 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQAFPNEHGHRAVK 100 7************************************************9999777664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.622	41	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-22	42	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MAYSGNSSAN AAAAEGSISA VSPTSSSSPP SSPPSPPVIL SPCAACKILR RRCVEKCVLA 60 PYFPPTEPLK FTIAHRVFGA SNIIKLLQAF PNEHGHRAVK GASLSGHGIV LLREASPNRR 120 CNTGILAYWH RAAREASLSG HGHRAVRKAL LSGHGIVLLR EASPNRRKHQ T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-18	34	99	3	68	LOB family transfactor Ramosa2.1
5ly0_B	1e-18	34	99	3	68	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Si024430m	6e-32	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-28	LOB domain-containing protein 1