PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010248-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 340aa    MW: 35395.9 Da    PI: 6.2504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010248-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20157206255
                    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae+Aa+a+++a++ ++g
  SMil_00010248-RA_Salv 157 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALHFRG 206
                            7********.**********66.....56**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-23157215IPR016177DNA-binding domain
PfamPF008477.4E-14157206IPR001471AP2/ERF domain
SMARTSM003807.5E-37157220IPR001471AP2/ERF domain
PROSITE profilePS5103225.225157214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-33157215IPR001471AP2/ERF domain
PRINTSPR003674.7E-12158169IPR001471AP2/ERF domain
CDDcd000181.61E-30160216No hitNo description
PRINTSPR003674.7E-12180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MCVSKVANPR KSVGENRDKG NDDLFDHDLV INNALDSMIS PLLSGFSRER EMSAMVSALA  60
HVVAGDVAGE GEAAADGGGG GGSACKRGRD EQLQPSESVT RFCRGYTDFA IGSSNLGEAA  120
GTSIIASTAA AAIYSYSATF SQDHQNAADS SSRISRRYRG VRQRPWGKWA AEIRDPFKAA  180
RVWLGTFDTA EDAARAYDEA ALHFRGSKAK LNFPENVRLI HASPSSSSSP LSSSSPPARI  240
AAVSTAADAI VHTRPQFQGQ NVSLGDMPMQ GVGGYFPGFT PCYTAGFSGG FQSFPAPVAP  300
YSTVFPAARP PGADGAAEGS QGSGGGAEFS WDSGNQTSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23156217466ATERF1
3gcc_A4e-23156217466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053183e-40AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149613e-40AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-40CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090449.16e-97ethylene-responsive transcription factor ABR1-like
TrEMBLA0A4D8YFS03e-93A0A4D8YFS0_SALSN; EREBP-like factor
STRINGMigut.H02460.1.p5e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-26ethylene response factor 110