PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010316-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 510aa    MW: 55233.5 Da    PI: 5.9283
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010316-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.1e-12199255155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  SMil_00010316-RA_Salv 199 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 255
                            78*******************433.44555535555.779999**************98 PP
2AP246.78.1e-15300349355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SMil_00010316-RA_Salv 300 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 349
                            9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-15199265IPR016177DNA-binding domain
CDDcd000181.11E-17199265No hitNo description
PfamPF008474.2E-9199255IPR001471AP2/ERF domain
PROSITE profilePS5103217.332200263IPR001471AP2/ERF domain
SMARTSM003803.6E-23200269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-12200264IPR001471AP2/ERF domain
PRINTSPR003671.1E-6201212IPR001471AP2/ERF domain
CDDcd000181.23E-23298359No hitNo description
SuperFamilySSF541718.5E-18298359IPR016177DNA-binding domain
PROSITE profilePS5103219.137299357IPR001471AP2/ERF domain
SMARTSM003802.1E-34299363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-18299357IPR001471AP2/ERF domain
PfamPF008471.6E-9300349IPR001471AP2/ERF domain
PRINTSPR003671.1E-6339359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRVGGGGG EIDGTAAAED SNGGGCFPPH IPAIPLRSEH YWRYDNEMNE  60
SNPNEEGGPK FEDFLGNCYS NSPQNEPGEI NMNMPPNFDD QKREDFNNPP LFYPYQYADG  120
GGGYFGGGGG GGGAGFKTWM QQPPAEGGGR GDLQALSLTV QPSSQAAPPP AVAADGKKRA  180
AAKEPVPRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQGGYDKEE  240
KAARAYDLAA LKYWGPTTHI NFPLSDYEKE LEEMKNMTRQ EFVAHLRRKS SGFSRGASMY  300
RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGT SAVTNFDISR  360
YDVKRICSSS TLIAGDLAKR SPKHLGPAGQ DDYNSCASSA SPQAPLQITN GEADELADMM  420
WNAASDQDQA AKDDVQPGRG QGGGGSPGPP GPHLSPARMD PVIGDGGGYS QGYFLEGQKY  480
DDDDGCDVGG SGRAEVGLVH QAPTFSLWSE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072652.10.0AP2-like ethylene-responsive transcription factor AIL1, partial
SwissprotQ1PFE11e-132AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A4D9B6J60.0A0A4D9B6J6_SALSN; AP2-like factor, ANT lineage
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-121AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]