PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010393-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 406aa    MW: 44693 Da    PI: 9.0261
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010393-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-17111160155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  SMil_00010393-RA_Salv 111 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 160
                            78*******************......55************************997 PP
2AP2422.3e-13203253155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+++GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  SMil_00010393-RA_Salv 203 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDTEVEAARAYDKAAIKCNG 253
                            79********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-9111160IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-15111168IPR016177DNA-binding domain
CDDcd000185.14E-11112167No hitNo description
SMARTSM003802.0E-30112174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-17112168IPR001471AP2/ERF domain
PROSITE profilePS5103217.477112168IPR001471AP2/ERF domain
CDDcd000183.44E-25203261No hitNo description
PfamPF008471.1E-8203253IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17203261IPR016177DNA-binding domain
PROSITE profilePS5103215.185204261IPR001471AP2/ERF domain
SMARTSM003803.9E-32204267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-16204261IPR001471AP2/ERF domain
PRINTSPR003671.0E-5205216IPR001471AP2/ERF domain
PRINTSPR003671.0E-5243263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MMFDLNLSVG CNGRQSPATS VSSVVDGAGE TSSSNDDASS SVALNFGIIG ADRDRDRAAL  60
VTRELFPASR LGELSDPVIL GAPTRTVMPA QQQVQQVQAR KSRRGPRSRS SQYRGVTFYR  120
RTGRWESHIW DCGKQVYLGG FDTALAAARA YDRAAIKFRG VDADINFNLC DYEEDMKHTK  180
NMSKEEFVHI LRRQSTGFSR GSSKFRGVTL HKCGRWEARM GQFLGKKYIY LGLFDTEVEA  240
ARAYDKAAIK CNGREAVTNF DSTSYDGEMM PHSCSGNDLD LNLGISTSSP KETANLGSFQ  300
FQNANMFKLH VENSAATKPC DSPLNGLPVI LNPPNYEERA GQGRTGLGST SEEVVKWAWR  360
MHDQVRATPI IAASSGFSSP YPTALNFCFS SNPTNVSHIR SSSPRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7844620.0KJ784462.1 Salvia miltiorrhiza AP11/EREBP Transcription Factors (WRI11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089852.11e-160ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AMA91e-101AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A0G2SJB91e-162A0A0G2SJB9_SALMI; AP11/EREBP Transcription Factors (Fragment)
STRINGPGSC0003DMT4000653131e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.36e-99related to AP2.7