PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010404-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 297aa    MW: 33845 Da    PI: 8.4883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010404-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09143190455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  SMil_00010404-RA_Salv 143 SHSLAERVRRERISERMKLLQTLVPGC----DKVTGKALMLDEIINYVQSLQ 190
                            8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-17137206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-10137194No hitNo description
PROSITE profilePS5088815.491139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-16139204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-7143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAAFSSTSFH HHHPFLLDSL FHPNATTIDA IANNNHLSSH NFNPSFLPNM DNNSSSIVTD  60
HKHESNDQIT QNFITPMDNK KRKCKSRSSA NSAQSKDKRE VKGKKQKKIK DDEEKKNNSK  120
EIKAAEAAGY IHVRARRGQA TDSHSLAERV RRERISERMK LLQTLVPGCD KVTGKALMLD  180
EIINYVQSLQ NQVEFLSMKL ASVNPMFYDF GVDLESFMVR PDQDLSDLPS PTSPHAESLM  240
VANNYNFLEN PLLFQQAQLP CVLPYPQGSR QTLWEVDEHR QKNFNQSGFN NSLFSFH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575520.0KP257552.1 Salvia miltiorrhiza clone 120 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022889922.14e-97transcription factor bHLH137-like
TrEMBLA0A0H3YB670.0A0A0H3YB67_SALMI; Basic helix-loop-helix transcription factor
STRINGSolyc03g097820.1.16e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-50bHLH family protein