PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010532-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 244aa    MW: 26517.2 Da    PI: 4.8166
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010532-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-193583355
                    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  SMil_00010532-RA_Salv 35 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 83
                           67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.2E-343497IPR001471AP2/ERF domain
PROSITE profilePS5103220.7453491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-293491IPR001471AP2/ERF domain
CDDcd000182.70E-283490No hitNo description
PRINTSPR003672.9E-83546IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-213592IPR016177DNA-binding domain
PfamPF008474.7E-123783IPR001471AP2/ERF domain
PRINTSPR003672.9E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSMSMSKPSP SKAKRKGAQP PPPPGQSDQS STNRFLGVRR RPWGRYAAEI RDPTTKERHW  60
LGTFDTAEEA ALAYDRAARS MRGSRARTNF VYSDMPPGSS VTSIISPDEQ RSDFSMLFVD  120
GAASDQRQIY FGQGEGQCSG FQLTGEAWAN SGGSFYGQGG SSQVPAAEDE LPPLPPDITS  180
SCYSGEPPVL SEMGHGVLND MRYLELSEQR RSMDAAVPYD AGYFGVDDSM EAARSSFSGG  240
FGWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-183590662ATERF1
3gcc_A1e-183590662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551701.11e-103uncharacterized protein LOC105168692
SwissprotQ9M6445e-50LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A4D9B6M91e-119A0A4D9B6M9_SALSN; EREBP-like factor
STRINGMigut.K01126.1.p4e-97(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-29ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]