PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010571-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 519aa    MW: 57569.4 Da    PI: 6.512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010571-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.38.6e-16305351455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  SMil_00010571-RA_Salv 305 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 351
                            6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-20298359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-20299368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.12E-17304355No hitNo description
PfamPF000103.1E-13305351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
LKTNYSNQTM NHCVPEFHEM EDDDSIPTPS TFSRPKRTAT GEEEIMELLW QNGQVVVQSQ  60
NQKPPKRTDS CGGSGEVVIP PEREIRSTAE EHQHLFMQED EMASWLQYPL DDSFDRDFYA  120
DLLYSAPPPP PLITATANAQ PRAAAEIRPP PIQTPVARPD NPPRVHNFVH FSRLPIRPRM  180
APQESSTVVE SNETPTGARE SRVSHKVTDS RPPVHADTST VRTRDTSGAA GTCDLTVTSS  240
PDGSPASFSG ETHQPQQKPA ADRKRKVREA DDNECQSEDI EFEASEGKKQ GRGSSSTKRS  300
RAAEVHNLSE RRRRDRINEK MRALQELIPR CNKSDKASML DEAIEYLKSL QLQVQMMSMG  360
CGMVPMMYPA GMQQYMPAMG LGMGMGMGMD MGMSRPVVHY PPMMAGSAMP NPAAAAAQMG  420
PRFALPPFHM QPVPVPDPSR SQPTNHTDPV PNSTTPQNHN HPRFPSFSDS YQQYLGFHPT  480
QLPIPQARLI SINQGVVQHD DNKPSTSKDI GNPHNQQTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309314ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575540.0KP257554.1 Salvia miltiorrhiza clone 122 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083103.10.0transcription factor PIF1
TrEMBLA0A0H3YBW70.0A0A0H3YBW7_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.N02248.1.p1e-168(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-52phytochrome interacting factor 3-like 5