PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010624-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 258aa    MW: 28166.6 Da    PI: 6.0343
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010624-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.95.2e-4110109199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            aCaaCk++rrkC++ C+lapyfpa+qpk f+nvh+lFG+snv+k+l+al  +e+redam+s++yeA++r r Pv G+ gvi +l++ql
  SMil_00010624-RA_Salv  10 ACAACKYQRRKCSPTCPLAPYFPANQPKMFQNVHRLFGVSNVTKTLDALkTKEQREDAMRSIIYEADMRERFPVDGCSGVIAQLTHQL 97 
                            7************************************************55666********************************** PP

                 DUF260  88 eqlkaelallke 99 
                            + ++ el+++++
  SMil_00010624-RA_Salv  98 RLARDELDYVRA 109
                            *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.9919111IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-3910108IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTVKGGSTPA CAACKYQRRK CSPTCPLAPY FPANQPKMFQ NVHRLFGVSN VTKTLDALKT  60
KEQREDAMRS IIYEADMRER FPVDGCSGVI AQLTHQLRLA RDELDYVRAT IAACREQAAL  120
AAAKPADCWL DYAPGEAAAA GFLFNDGACE PCGSDTMSSN LSSIQAQMEA FVIHQKRNVS  180
VDFGAQQFNN AAAVFDHDRQ SSYIEPKNEA FESSLDSTLD DAEESGCRRE MRGGAATEHG  240
CRRELRSAAA GFSLTTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2921254127LOB family transfactor Ramosa2.1
5ly0_B3e-2921254127LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085863.13e-66LOB domain-containing protein 22-like
TrEMBLA0A4D9C4N92e-64A0A4D9C4N9_SALSN; Uncharacterized protein
STRINGMigut.K01341.1.p2e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-40LOB domain-containing protein 27