PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010646-RA_Salv
Common NameSmWRI1
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 304aa    MW: 33719.2 Da    PI: 4.2227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010646-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-1679130155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV +++ +grW+A+I  ++    +k+ +lg++ t eeAa+a++ a+ +++g
  SMil_00010646-RA_Salv  79 SKYRGVARHHHNGRWEARIGRVCG---NKYLYLGTYSTQEEAAAAYDMAAIEFRG 130
                            89****99***********99644...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.389144IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-81045IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-71344IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-1879140IPR016177DNA-binding domain
PfamPF008478.6E-1279130IPR001471AP2/ERF domain
CDDcd000181.21E-1779140No hitNo description
PROSITE profilePS5103218.45280138IPR001471AP2/ERF domain
SMARTSM003802.1E-2980144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-1980138IPR001471AP2/ERF domain
PRINTSPR003674.3E-58192IPR001471AP2/ERF domain
PRINTSPR003674.3E-5120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSLICELNYD AINVGAYDNE EDAARTYDLA ALKYWGPATI LNFPVEGYTK DVEEMQKLSK  60
EEYLASLRRR SSGFSRGVSK YRGVARHHHN GRWEARIGRV CGNKYLYLGT YSTQEEAAAA  120
YDMAAIEFRG PNAVTNFDIS NYADKLKKFI PEVQVEEVHV KQETNSTPPD EVQADEDPHP  180
VAETSSPKPE PKDSNESEGM VTMEPIEEHG HPWDLCLDTL FNILPIPDMP LGKASEVFDY  240
KGFDDDIECI FDEPLDDNEI LQYGGQIDAA DALVAQDLKG RDASASTSPS SSPLSSTTSA  300
CSNI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8879440.0KF887944.1 Salvia miltiorrhiza AP2 / EREBP Transcription Factor (SmWRI1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078716.11e-132ethylene-responsive transcription factor WRI1
TrEMBLA0A0R5QQ640.0A0A0R5QQ64_SALMI; AP2 / EREBP Transcription Factor
STRINGMigut.B01163.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91342227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-60AP2 family protein