PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010650-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 255aa MW: 29491.5 Da PI: 9.7135

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010650-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68	1.4e-21	20	110	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ffkv ++s+++++p +f++++ + + +++l++++g+ W+v++ ++++++++l++GW +Fv+ +gLk+g+f+vF+++g+ SMil_00010650-RA_Salv 20 FFKVY--LPQFSSHQIRIPPDFTKNFRR--ALNEKVILKNKDGKAWSVEV--KRTPEGVFLKDGWPRFVDYHGLKVGEFLVFRYNGSY 101 77777..788999********77753..35669***********..******************************9988 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v++f + SMil_00010650-RA_Salv 102 SF--LVQIFGT 110 88..9999975 PP
2	B3	32.8	1.3e-10	172	254	11	98
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++l +p + + ++++++ + ++ l++ +g++W v++ y+ g ++l++G F k+n++ +D + F + ++++ vk++r SMil_00010650-RA_Salv 172 SRRRMLKIPEEVM-NNENVH-LEAEVNLRNAEGKEWPVNI-YTMLNGPTFLGRGLCAFQKDNNVGPKDCCKFIFG--NQTTIDVKILR 254 4567899**99.776664.668************.666666699********************963..57777888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	15.354	18	111	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.4E-25	19	113	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-24	19	113	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.7E-20	20	109	IPR003340	B3 DNA binding domain
CDD	cd10017	1.62E-17	20	108	No hit	No description
SMART	SM01019	3.2E-18	20	111	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.769	162	255	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.3E-11	165	254	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.16E-11	168	254	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.1E-8	172	254	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MARKRGRKGR FVSTVEGAEF FKVYLPQFSS HQIRIPPDFT KNFRRALNEK VILKNKDGKA 60 WSVEVKRTPE GVFLKDGWPR FVDYHGLKVG EFLVFRYNGS YSFLVQIFGT NGCKKEKFGP 120 QDIASHVKSE VESDNDDSSS VDRSKLFKRF EEEEEDNNNE FPKRPSFVSP PSRRRMLKIP 180 EEVMNNENVH LEAEVNLRNA EGKEWPVNIY TMLNGPTFLG RGLCAFQKDN NVGPKDCCKF 240 IFGNQTTIDV KILRH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D8XRI5	1e-85	A0A4D8XRI5_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3779	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	2e-20	B3 family protein