PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010803-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 103aa MW: 11286.7 Da PI: 4.3576

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010803-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.5	1.9e-13	22	72	48	98
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 ++p ++r da++slvyeA r+++PvyG++++i +lq+++ ql++el+++ SMil_00010803-RA_Salv 22 DVPVTDRGDAVASLVYEATTRLQQPVYGCIALIASLQKRVFQLQSELDEVS 72 678899****************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	5.1E-12	21	71	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MVVNGGEVRD EGEKVVIENE GDVPVTDRGD AVASLVYEAT TRLQQPVYGC IALIASLQKR 60 VFQLQSELDE VSATTMRLRT QLSSVLSFIG SAESWLQKRG EQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503569.1	8e-21	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_016503570.1	7e-21	PREDICTED: LOB domain-containing protein 25-like isoform X2
TrEMBL	A0A1S4CR38	2e-19	A0A1S4CR38_TOBAC; LOB domain-containing protein 25-like isoform X2
TrEMBL	A0A1S4CRC5	2e-19	A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1
STRING	Solyc06g082770.2.1	1e-18	(Solanum lycopersicum)
STRING	PGSC0003DMT400071132	5e-19	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	5e-14	LOB domain-containing protein 25