PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010861-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 123aa    MW: 13486.1 Da    PI: 9.4818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010861-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-16958255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr +k +g++v+eIr p++   r r++lg+++ ae+Aa+a +aa  +l+g
  SMil_00010861-RA_Salv  9 KYRGVRKRK-WGKYVCEIRLPNS---RERIWLGSYDAAEKAARAFDAALFCLRG 58
                           8*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.96E-24868No hitNo description
Gene3DG3DSA:3.30.730.101.7E-29967IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-20967IPR016177DNA-binding domain
PROSITE profilePS5103221.219966IPR001471AP2/ERF domain
SMARTSM003806.6E-30972IPR001471AP2/ERF domain
PfamPF008476.0E-10958IPR001471AP2/ERF domain
PRINTSPR003671.7E-91021IPR001471AP2/ERF domain
PRINTSPR003671.7E-93248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSGTAAEAKY RGVRKRKWGK YVCEIRLPNS RERIWLGSYD AAEKAARAFD AALFCLRGRA  60
AKFNFPDDPP DIPGGESLSP SEIQAVAQRY GKSYGSGRLP QAAEDGFRAR ASEDSARVDL  120
IDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-185681074Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855787.15e-49PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ9C5912e-42ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A4D8ZP081e-53A0A4D8ZP08_SALSN; Uncharacterized protein
STRINGMigut.A00330.1.p3e-48(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-35ERF family protein