PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011037-RA_Salv
Common NameMYB41
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 214aa    MW: 24911.9 Da    PI: 8.2202
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011037-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-171158148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +lv +v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  SMil_00011037-RA_Salv 11 KGPWTEEEDAQLVFYVNLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 58
                           79********************************************97 PP
2Myb_DNA-binding53.84.4e-1764109148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  SMil_00011037-RA_Salv  64 RGKMTPHEERLVLQLHSKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 109
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.599658IPR017930Myb domain
SuperFamilySSF466894.58E-309105IPR009057Homeodomain-like
SMARTSM007171.1E-141060IPR001005SANT/Myb domain
PfamPF002491.2E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-221265IPR009057Homeodomain-like
CDDcd001671.29E-101358No hitNo description
PROSITE profilePS5129425.98359113IPR017930Myb domain
SMARTSM007172.8E-1663111IPR001005SANT/Myb domain
PfamPF002495.8E-1564108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2366112IPR009057Homeodomain-like
CDDcd001674.32E-1166109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MMEKEDSTMR KGPWTEEEDA QLVFYVNLFG DRRWDFIAKV SGLKRTGKSC RLRWVNYLHP  60
GLKRGKMTPH EERLVLQLHS KWGNRWSRIA RKIPGRTDNE IKNYWRTHMR KKAQDQKKKS  120
IAQSSSSSSS SSSTKGPSFY DTGGDNKSKT GAEEVYSMDE IWKDIELCEE SSSFTPLAWD  180
FPTDDSLWAV DEEEPKMLIA HQYDSFPFDN HMTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-29111134105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-281111358159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-281111358159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-28911325128MYB TRANSFORMING PROTEIN
1mse_C7e-29111134105C-Myb DNA-Binding Domain
1msf_C7e-29111134105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593950.0KF059395.1 Salvia miltiorrhiza MYB-related transcription factor (MYB41) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089426.12e-98transcription factor MYB48 isoform X2
SwissprotQ9LX821e-75MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A059PRJ41e-159A0A059PRJ4_SALMI; MYB-related transcription factor
STRINGXP_004487036.15e-85(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.17e-76myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]