PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011197-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 223aa    MW: 24401.2 Da    PI: 6.5299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011197-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13159204655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR ri +++ +L+el+P+     +k  + a++Le+Av Y+k+Lq
  SMil_00011197-RA_Salv 159 SIAERERRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVAYVKHLQ 204
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.583153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-15156217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.89E-12157208No hitNo description
Gene3DG3DSA:4.10.280.102.3E-15158218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-11159204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-12159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MQPPRGSGSA ELTRSDGGGL ARYRPPPPPN ASAADVDLEL LESAGGGGFS NFLRMNSSPA  60
EFLSLLNSSE GFFSNLGIPA DYELVPATSA KRAREAEDLD RISPKKSPSS SSSTHLKGEK  120
RRQLQGSGGS LDLDMENLLE DSVMCRVRAK RGCATHPRSI AERERRTRIS DRIRKLQELV  180
PNMDKQTNTA DMLEEAVAYV KHLQKEIQLS GYHNDQLGED LYG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121LKGEKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574610.0KP257461.1 Salvia miltiorrhiza clone 28 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848299.16e-80PREDICTED: transcription factor bHLH80 isoform X1
SwissprotQ9C8P83e-53BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0H3Y7H31e-161A0A0H3Y7H3_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.N03367.1.p2e-79(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-44bHLH family protein