PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011218-RA_Salv

Common Name

SPL1

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

SBP

Protein Properties

Length: 1060aa MW: 117220 Da PI: 7.3685

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011218-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.4	1.3e-40	141	218	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhska ++lv +++qrfCqqCsrfh lsefD++krsCrrrLa+hn+rrrk+q+ SMil_00011218-RA_Salv 141 MCQVDDCKEDLSTAKDYHRRHKVCEVHSKAGKALVGKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNRRRRKTQP 218 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.2E-34	136	203	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.616	139	216	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.97E-37	140	219	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.4E-30	142	215	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	1.4E-4	821	959	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.73E-7	821	966	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	8.667	904	957	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.576	904	937	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1060 aa Download sequence Send to blast
LAQRFCNPHP IVKKRSVPFY SSNFVNQNPP DNWNPKSWDW DSSRFIARPV QCDGDQVTRG 60 SQAPLDLERN KEAQNSALKP SEPNQIGKDD ENLRLKLGGG EKQAVSNGSH GSMNLMEEQH 120 PVSRPSKRVR SGSPGTANRP MCQVDDCKED LSTAKDYHRR HKVCEVHSKA GKALVGKQMQ 180 RFCQQCSRFH PLSEFDDGKR SCRRRLAGHN RRRRKTQPED ATPRVSVPSG AHNDINCEVD 240 VINLLAALAR PQGNPEDRNA KFSSIPDKDQ LVQILSKINS LPLPAILASK LPHLKTTSGS 300 ISDHAHSENQ NQMSANASSP STMDLLAGLS GAPGAPSDAL EIQSQPSKEK SESEKSKSPD 360 VDNAGRLDTQ KGSTVEFPSV GGEWSSTSCQ HSPMEEVDCH VPDSSPSLHL QLFSSSPEDN 420 SSRKLPLNAN YLSSNSSNPS QDISPTSSPP LVRDLFPMRT SRETMKDNHF SNSEDELACA 480 KSTMSNGCST SLRLFGGSIQ PVENASIQSS PYQAGYTSSS GTDHSPSSLN SDAQDRTGRI 540 IFKLFDKDPS HLPGSLRTQI FHWLSNSPSE MESFIRPGCI VLSLYLSMPS YAWDHIEENL 600 FGCVSSLVKG VDVSFWGNGR FLVCTERQMA SHNDGKIRLY KTWKGFAMPE LISVSPVAVV 660 SGQETSLLLR GRGLTAPGTK VHCTHADGYN IEEVRASSCQ DAALDEINLS SFKINGTASN 720 MLGRCFIEVA ILKAVENSFR GTTFPVIIAD KPICHELRLL EPHINGSAEV GNDHLESTGR 780 SWSREEVVHF LDELGWLFQR KWNSTLFGIP DYRLNRFKFL LIFAVEHDFC ALVKTLLDIL 840 LELNLGRKGL VTESMAMLWE IHPLNRAVRR RCRRMVDLLV HYSVIDPDDA SEKYIFTPNL 900 AGPGGLTPLH LAASATSSED LIDALISDPQ EVGLQSWNSA LDVNGLSPYA YALMRNNHSY 960 NDLVARRVAE RKNGEVCVAI EKERKPLEVE KERCSMCAVA GYRRQSKRYG GSKGLLQQPY 1020 IHSMLLVAAV CVCVCVFLRG HPYVGCVVPF AWENLDYGPR

Sequence ? help Back to Top

Protein Sequence Length: 1060 aa Download sequence Send to blast

LAQRFCNPHP IVKKRSVPFY SSNFVNQNPP DNWNPKSWDW DSSRFIARPV QCDGDQVTRG  60
SQAPLDLERN KEAQNSALKP SEPNQIGKDD ENLRLKLGGG EKQAVSNGSH GSMNLMEEQH  120
PVSRPSKRVR SGSPGTANRP MCQVDDCKED LSTAKDYHRR HKVCEVHSKA GKALVGKQMQ  180
RFCQQCSRFH PLSEFDDGKR SCRRRLAGHN RRRRKTQPED ATPRVSVPSG AHNDINCEVD  240
VINLLAALAR PQGNPEDRNA KFSSIPDKDQ LVQILSKINS LPLPAILASK LPHLKTTSGS  300
ISDHAHSENQ NQMSANASSP STMDLLAGLS GAPGAPSDAL EIQSQPSKEK SESEKSKSPD  360
VDNAGRLDTQ KGSTVEFPSV GGEWSSTSCQ HSPMEEVDCH VPDSSPSLHL QLFSSSPEDN  420
SSRKLPLNAN YLSSNSSNPS QDISPTSSPP LVRDLFPMRT SRETMKDNHF SNSEDELACA  480
KSTMSNGCST SLRLFGGSIQ PVENASIQSS PYQAGYTSSS GTDHSPSSLN SDAQDRTGRI  540
IFKLFDKDPS HLPGSLRTQI FHWLSNSPSE MESFIRPGCI VLSLYLSMPS YAWDHIEENL  600
FGCVSSLVKG VDVSFWGNGR FLVCTERQMA SHNDGKIRLY KTWKGFAMPE LISVSPVAVV  660
SGQETSLLLR GRGLTAPGTK VHCTHADGYN IEEVRASSCQ DAALDEINLS SFKINGTASN  720
MLGRCFIEVA ILKAVENSFR GTTFPVIIAD KPICHELRLL EPHINGSAEV GNDHLESTGR  780
SWSREEVVHF LDELGWLFQR KWNSTLFGIP DYRLNRFKFL LIFAVEHDFC ALVKTLLDIL  840
LELNLGRKGL VTESMAMLWE IHPLNRAVRR RCRRMVDLLV HYSVIDPDDA SEKYIFTPNL  900
AGPGGLTPLH LAASATSSED LIDALISDPQ EVGLQSWNSA LDVNGLSPYA YALMRNNHSY  960
NDLVARRVAE RKNGEVCVAI EKERKPLEVE KERCSMCAVA GYRRQSKRYG GSKGLLQQPY  1020
IHSMLLVAAV CVCVCVFLRG HPYVGCVVPF AWENLDYGPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	132	215	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF437877	0.0	KF437877.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 1 (SPL1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083361.1	0.0	squamosa promoter-binding-like protein 14
TrEMBL	A0A075FFL7	0.0	A0A075FFL7_SALMI; SQUAMOSA promoter binding protein-like 1 (Fragment)
STRING	Migut.C00339.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Zhang L, et al. Genome-wide analysis and molecular dissection of the SPL gene family in Salvia miltiorrhiza. J Integr Plant Biol, 2014. 56(1): p. 38-50 [PMID:24112769]