PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011398-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 127aa MW: 14229.5 Da PI: 8.3208

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011398-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.3	1.3e-38	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C++dC++apyfp+++p++fa+vhk++Gasnv k+l++lp + r +a+++l+yeA +r++dPvyG++g+++ l+qql+ SMil_00011398-RA_Salv 10 RCAACKHLRRRCPSDCIFAPYFPSNNPRRFAYVHKIYGASNVGKILEDLPVNCRAQAADTLCYEAYCRIKDPVYGCAGMVSVLHQQLN 97 6************************************************************************************* PP DUF260 89 qlkaelallkee 100 ++ +la++k+e SMil_00011398-RA_Salv 98 VAECQLATVKAE 109 *****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.48	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-38	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
LILDGMNWSR CAACKHLRRR CPSDCIFAPY FPSNNPRRFA YVHKIYGASN VGKILEDLPV 60 NCRAQAADTL CYEAYCRIKD PVYGCAGMVS VLHQQLNVAE CQLATVKAEV TAIRNDSATL 120 TLPTWFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-33	11	110	12	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-33	11	110	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098999.1	2e-60	LOB domain-containing protein 23-like
Swissprot	P59468	2e-43	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A4D8YKS0	1e-62	A0A4D8YKS0_SALSN; Uncharacterized protein
STRING	Migut.K00626.1.p	3e-54	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	7e-46	LOB domain-containing protein 24