PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011401-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 205aa    MW: 23366.6 Da    PI: 5.2644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011401-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09101145655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++ r+RR++i  + +eL +l+P       ++++ ae+L+ A +YIk Lq
  SMil_00011401-RA_Salv 101 SIAARQRRRKITLKTQELGKLVPGG-----QRMNTAEMLQSAYNYIKFLQ 145
                            6788*******************96.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.16795144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1296158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1296160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-998149No hitNo description
SMARTSM003532.6E-10101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-7101145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MALSYYTFQQ PDYDPELQSL LNPDDYSLLC EDLTYHANGL PLDLDNLTTP FLLPHQQQQS  60
QAPFPKRHKL SLPEFVSLPQ FPAADFSCES AKNETSLSAQ SIAARQRRRK ITLKTQELGK  120
LVPGGQRMNT AEMLQSAYNY IKFLQAQVAL LGSHHQEVPF EGEEELQNLL ESPLIQEKLY  180
STQHCLLPIP ICWKRIIDDS RPLPS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574380.0KP257438.1 Salvia miltiorrhiza clone 5 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554086.19e-40transcription factor bHLH52
TrEMBLA0A0H3Y8R61e-148A0A0H3Y8R6_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009771680.12e-38(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.14e-17bHLH family protein