PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011497-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 215aa    MW: 23373.9 Da    PI: 10.2236
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011497-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17143176134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  SMil_00011497-RA_Salv 143 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 176
                            99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.2E-692214IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.477137173IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-15137187IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.7E-15141174IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.47E-15141200No hitNo description
CDDcd002024.28E-13142189No hitNo description
PfamPF003202.2E-15143176IPR000679Zinc finger, GATA-type
PROSITE patternPS003440143168IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
LQGCDTLFSG SPASDLAAEL SVPYEDIVQL EWLSTFVEDS FSGGGLTVGK EKKEQLSPVS  60
VVESSTSSSS SSAVPLSPRH RGPQRARSKR PRPPMFNPRP AIQLISPASS ESNSFAESSP  120
LKKSKKIKIT LPATPTPQPL RKCLHCEITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE  180
YRPAASPTFV PSLHSNSHKK VIEMRCKVEP MITSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076972.11e-94GATA transcription factor 8-like
RefseqXP_011076974.11e-94GATA transcription factor 8-like
TrEMBLA0A4D8ZQU91e-105A0A4D8ZQU9_SALSN; Uncharacterized protein
STRINGXP_009598426.11e-87(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-42GATA family protein