PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011498-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 987aa    MW: 110649 Da    PI: 7.8832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011498-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.1e-06190216430
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                            +h+ +Er RR++i +++  L++l+P +
  SMil_00011498-RA_Salv 190 SHSLAERARREKISERMKILQDLVPGC 216
                            79***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-7184219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.347186242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-7190219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF511107.85E-16268347IPR001480Bulb-type lectin domain
Gene3DG3DSA:2.90.10.105.4E-10270321IPR001480Bulb-type lectin domain
PfamPF014534.5E-20270343IPR001480Bulb-type lectin domain
PfamPF009541.9E-21374483IPR000858S-locus glycoprotein domain
CDDcd010987.16E-22503588No hitNo description
PfamPF082763.8E-18505571IPR003609PAN/Apple domain
PROSITE profilePS509489.6505588IPR003609PAN/Apple domain
SMARTSM004731.6E-11506587IPR003609PAN/Apple domain
Gene3DG3DSA:2.60.120.2009.0E-14596687IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561122.56E-78656961IPR011009Protein kinase-like domain
SMARTSM002207.8E-28674952IPR000719Protein kinase domain
PROSITE profilePS5001137.672674952IPR000719Protein kinase domain
PfamPF000691.1E-45676883IPR000719Protein kinase domain
CDDcd140661.35E-89680945No hitNo description
Gene3DG3DSA:3.30.200.204.7E-27688736No hitNo description
Gene3DG3DSA:1.10.510.102.8E-43737937No hitNo description
PROSITE patternPS001080795807IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0048544Biological Processrecognition of pollen
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MLIAAIGHLY AFPYKEYAGA NIGSNHGWSD SELFIICMLG VLEGICRLLL VDRHGSAPLW  60
QTCSIGNFET RCICRLLLVD TMLTDQRSND DSRKQWDGDE HCAKGEELPP AAAMAAAATT  120
ITTSRGELEC CWNGYNELRG MRLKQWVNLK WKGREFWQGG GRGGEMLEAR RTAEARLHPC  180
SSKTRSSYDS HSLAERARRE KISERMKILQ DLVPGCNKLH VCSPSFNMSE LLSRSRHQSS  240
SVSLLPGRAA SPGKSELFLG IRKWKCCISR DGSVIWSGNP SGVASNPVLQ LLDTGNLVVV  300
DETTRGYIWQ SFDYPVDTWL PGMKLVADDM DGGGETYLTS WRNSDDPSPG DIVFRIVNQG  360
MPELVAYRGE NKVFRSGQWN GIRFSSTPPS DNNVFKAKFE LRGDRLISMT RSYESSIFVI  420
VRSKLDASGE LQRLTMNSQG DMWTHVMSFP QDKCGKYGHC GPYAICRIEK VQRCECFSGF  480
KPVSQNDWER QHWYGGCRRV EALNCEGGDD FLKVEGVQYP DMLKFWINTS MSLGECKAQC  540
LKNCSCTAVA NPYVTDGGSG CVMWLGDLID IRHISDADEN QNLYIRLPIS VLGKFSDTTK  600
SDNNEEKKKK RTGRNTKLIV ILVTCGVVLA GLIIMGVIRW TTRRKRAALK KANSEDLELP  660
LFKFATIMAA TEGFSLDNLI GEGGFGPVYK GNLSAGEEIA VKRLSTTSQQ GIKEFKNEVI  720
LIAKLQHRNL VKLLGCCIEG EERMLIYEYL QNKSLNYFVF DQNGRTVLTW PKRFDIIMGI  780
ARGLLYLHQD SRLKIIHRDL KTSNILLDGD LNPKISDFGL ARIFGEGQSI ATTRRVVGTY  840
GYMAPEYAID GKYSVKSDMF ALGVILLEIV SGKKNRGFDH GDHYHSLLGH TWLLWKENNI  900
VELMDECLSD TFIESQVRRC IHVGLLCVQK FAEDRPAISS VVSMLGNDRA IIAEPKEPGF  960
FIERSLSPSC RTSTCQETLT VTELEAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cth_A1e-596629595298Concanavalin A-like lectin protein kinase family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574441e-114KP257444.1 Salvia miltiorrhiza clone 11 basic helix-loop-helix transcription factor mRNA, complete cds.
GenBankKP2574821e-114KP257482.1 Salvia miltiorrhiza clone 49 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554436.10.0G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1
TrEMBLA0A2G9GUP30.0A0A2G9GUP3_9LAMI; Serine/threonine protein kinase
STRINGMigut.H01892.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.23e-16WRKY family protein