PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011521-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 172aa MW: 20318.4 Da PI: 9.629

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011521-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98	6.8e-31	51	105	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++F+e+v++LGG++kAtPk il+lmk +gLt+ h+kSHLQkYR+ SMil_00011521-RA_Salv 51 KTRIRWTEDLHKKFIECVDRLGGAKKATPKGILKLMKCDGLTIFHIKSHLQKYRV 105 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.286	48	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-27	49	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-17	49	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-24	51	105	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-8	55	104	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-16	125	170	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
LSRMQDVGNL RDMNYHQNNI VMENYYYSYS KPQHSFGSKL IASENEAAKH KTRIRWTEDL 60 HKKFIECVDR LGGAKKATPK GILKLMKCDG LTIFHIKSHL QKYRVSELMP EEKEGNSEQV 120 DYKNIVEALR LQIDVQRQLY EQLESQKKLQ MRIEEQAKQL QTMLQCQLKT KN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-23	51	106	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	51	106	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	51	106	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	51	106	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093383.2	3e-67	protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
Refseq	XP_020553372.1	3e-67	protein PHOSPHATE STARVATION RESPONSE 1-like isoform X2
Swissprot	Q0WVU3	1e-48	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A4D8ZJU6	3e-75	A0A4D8ZJU6_SALSN; Uncharacterized protein
STRING	XP_010257440.1	5e-50	(Nelumbo nucifera)
STRING	XP_010423296.1	4e-50	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16717	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-51	G2-like family protein