PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011531-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 195aa    MW: 20811.9 Da    PI: 8.8867
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011531-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26079.94.1e-252102196
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C++lr++C++ C+l   +      ++q +++ +v+k+FG++ ++++++a+p ++ +++++sl++eA  r+ +Pv+Ga+g+++++
  SMil_00011531-RA_Salv   2 SCNGCRILRKGCSDTCILNTSLqfihsGEAQGHATLFVAKFFGRAALMSFISAVPLNQTSAVFQSLLFEAAGRTVNPVSGAAGLLWTG 89 
                            6******************9998887767889******************************************************** PP

                 DUF260  84 qqqleqlkaelal 96 
                            +++++q+++ ++l
  SMil_00011531-RA_Salv  90 NWHVCQAAVATVL 102
                            ******9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3411107IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-22299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSCNGCRILR KGCSDTCILN TSLQFIHSGE AQGHATLFVA KFFGRAALMS FISAVPLNQT  60
SAVFQSLLFE AAGRTVNPVS GAAGLLWTGN WHVCQAAVAT VLRGGTLSPI PSGPDFDAAD  120
IFKAEGPPRR KASIPKRQEA DLDLSLRAGF PAKKNQPFPE RPRPLGSPSM NSQESEMTTC  180
GGQPPPEIKI LNLFN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099355.11e-83LOB domain-containing protein 37-like
SwissprotQ9SN235e-59LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2G9HIR75e-84A0A2G9HIR7_9LAMI; Uncharacterized protein
STRINGMigut.H00361.1.p2e-80(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-61LOB domain-containing protein 38