PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011613-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 217aa    MW: 25475.6 Da    PI: 8.1503
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011613-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.12.1e-1167152189
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                            kfY +YA  +GF+      k skrn  it+r +  s+eg+++ +++k   ++r  + tr++Cka+ ++++++  g ++ t++++ Hn 
  SMil_00011613-RA_Salv  67 KFYFTYAVCCGFQGWLGLIKWSKRNV-ITHRFLLWSREGHKQYTDNK---NKRFMMITRVDCKARAVLRLMDaGGGYVFTDFVEPHNY 150
                            6****************999997777.9**************99877...9999******************99*************8 PP

                   FAR1  88 el 89 
                            ++
  SMil_00011613-RA_Salv 151 SF 152
                            76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-867152IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
LASQLFSVIL IDCLRYINAI DQVTEILSPD QFSKNNIIPE VDYIPHCEDD MKPRVEMIFP  60
KLIDGEKFYF TYAVCCGFQG WLGLIKWSKR NVITHRFLLW SREGHKQYTD NKNKRFMMIT  120
RVDCKARAVL RLMDAGGGYV FTDFVEPHNY SFISDNHRHF MCYNRNLNDG HMKFVLNCLR  180
ANIGSVKSFR LFKELVGEYD KVGCTIFDFK CHTPILE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-09FAR1-related sequence 5