PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011633-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 232aa MW: 26215.7 Da PI: 5.4442

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011633-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	57.5	2.7e-18	77	121	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +++ e+l+ +F +p+kd+ k+Lgv+ +++Kr+CR+yGI RWP Rk SMil_00011633-RA_Salv 77 SLTYEVLEPHFGKPLKDVVKDLGVGRSTIKRACREYGIGRWPNRK 121 6899****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.584	58	145	IPR003035	RWP-RK domain
Pfam	PF02042	8.0E-16	77	121	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.45E-15	152	226	No hit	No description
SMART	SM00666	8.8E-8	159	229	IPR000270	PB1 domain
PROSITE profile	PS51745	16.624	159	232	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.3E-16	159	227	No hit	No description
Pfam	PF00564	1.8E-12	160	228	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
LACGKQLGEE LVVEVIEFSD SSKLDSPESE QAHVFPIKFK SVQYEHQHTQ EQSTQECSVA 60 ALDSKSREKG KRKSGISLTY EVLEPHFGKP LKDVVKDLGV GRSTIKRACR EYGIGRWPNR 120 KEHEKNLPLF QEQSGGDSQQ DTSNESTHPV IVVEEEKEKV MIKVKYKEDT IKFELCLSLG 180 VSKLFEEVAT RLKLMVDTFK LKYVDEDNDE ILLACDADLH LCPKTLTATG QT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D8Z0G4	4e-74	A0A4D8Z0G4_SALSN; Uncharacterized protein
STRING	Migut.E00886.1.p	8e-50	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	3e-11	NIN like protein 7