PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011788-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 374aa MW: 42162.1 Da PI: 9.6873

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011788-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.7	1.9e-31	80	133	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+a+e+LGG+e+AtPk++l+lm+v gL+++hvkSHLQ+YR+ SMil_00011788-RA_Salv 80 PRLRWTPDLHLSFVHAIERLGGQERATPKAVLQLMNVRGLSISHVKSHLQMYRS 133 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.409	76	136	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-29	76	134	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.61E-14	78	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	80	135	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-8	81	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MSISGEDNMA SSDSSENLSS IDLNEEAGSN VVGDPMIEMS GISIQEARDE RSGDDSSKSE 60 DGHAKDKKNS VRQYVRSKMP RLRWTPDLHL SFVHAIERLG GQERATPKAV LQLMNVRGLS 120 ISHVKSHLQM YRSKKLDESG RVIGQANRIY IQGRGYLSSS SSAYNEKCSP FHELRMENGG 180 IVFARNHLDC STPFPQNLKS HHSLSSSRYH PWSSYRHEPK IRVEPGLISE VGTLEKRSIS 240 SKYIHALHES YGPLRPSQLL QGRRWPHIQN QSKEKEISKS NNIWSSSQSL RPQSRWINNN 300 SIHKSSFNLD RLQLMNEERK MERKEWFPAD LKLGLSLSLS SNNDQKGCSK DGGDHSDINT 360 KLSLALTPHS STAT

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MSISGEDNMA SSDSSENLSS IDLNEEAGSN VVGDPMIEMS GISIQEARDE RSGDDSSKSE  60
DGHAKDKKNS VRQYVRSKMP RLRWTPDLHL SFVHAIERLG GQERATPKAV LQLMNVRGLS  120
ISHVKSHLQM YRSKKLDESG RVIGQANRIY IQGRGYLSSS SSAYNEKCSP FHELRMENGG  180
IVFARNHLDC STPFPQNLKS HHSLSSSRYH PWSSYRHEPK IRVEPGLISE VGTLEKRSIS  240
SKYIHALHES YGPLRPSQLL QGRRWPHIQN QSKEKEISKS NNIWSSSQSL RPQSRWINNN  300
SIHKSSFNLD RLQLMNEERK MERKEWFPAD LKLGLSLSLS SNNDQKGCSK DGGDHSDINT  360
KLSLALTPHS STAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101395.1	1e-138	myb-related protein 2
Refseq	XP_020546992.1	1e-138	myb-related protein 2
TrEMBL	A0A4D9ARE9	1e-170	A0A4D9ARE9_SALSN; Uncharacterized protein
STRING	Migut.M01030.1.p	2e-66	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5516	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-37	G2-like family protein