PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011986-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 177aa    MW: 20430.8 Da    PI: 5.0565
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011986-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-19861356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            +++f++eq+++Le  Fe ++++ a++++e A++lgL+ rqV +WFqNrRa++k
  SMil_00011986-RA_Salv  8 DKRRFSDEQIRRLEVIFEAESKLEARKKAEVARELGLQPRQVAIWFQNRRARWK 61
                           6789*************************************************9 PP
2HD-ZIP_I/II115.53.2e-37999393
            HD-ZIP_I/II  3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                           krr+s+eq++ LE  Fe+e+kLe ++K+e+areLglqprqva+WFqnrRAR+k+k++Ek+y+aL ++y+al++e ++L+ke+++L ++l+
  SMil_00011986-RA_Salv  9 KRRFSDEQIRRLEVIFEAESKLEARKKAEVARELGLQPRQVAIWFQNRRARWKSKHIEKEYAALLANYNALAAEFDSLKKEKHSLLNQLE 98
                           9*************************************************************************************9998 PP

            HD-ZIP_I/II 93 e 93
                           +
  SMil_00011986-RA_Salv 99 K 99
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-18368IPR009057Homeodomain-like
PROSITE profilePS5007117.767363IPR001356Homeobox domain
SMARTSM003895.6E-17567IPR001356Homeobox domain
SuperFamilySSF466893.63E-17563IPR009057Homeodomain-like
CDDcd000861.79E-15664No hitNo description
PfamPF000466.6E-17861IPR001356Homeobox domain
PRINTSPR000311.7E-63443IPR000047Helix-turn-helix motif
PROSITE patternPS0002703861IPR017970Homeobox, conserved site
PRINTSPR000311.7E-64359IPR000047Helix-turn-helix motif
PfamPF021832.1E-1363103IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKKMSRSDKR RFSDEQIRRL EVIFEAESKL EARKKAEVAR ELGLQPRQVA IWFQNRRARW  60
KSKHIEKEYA ALLANYNALA AEFDSLKKEK HSLLNQLEKL KGKGDDDEEG GSGARCGGES  120
ESVKTNDFEV KNEGMVSVSD EEEMLRMVET TSDWGGLDCD DIIIDQSSSY QWWGFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00013PBMTransfer from AT3G61890Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093009.11e-52homeobox-leucine zipper protein ATHB-12
SwissprotQ9M2765e-41ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLA0A4D8YKX28e-67A0A4D8YKX2_SALSN; Homeobox-leucine zipper protein
STRINGXP_010054131.14e-49(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.22e-32homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]