PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012074-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 318aa    MW: 34898.6 Da    PI: 9.2786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012074-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14112158354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  SMil_00012074-RA_Salv 112 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 158
                            79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-12112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-14113165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14113167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-5122161No hitNo description
SuperFamilySSF550218.24E-5195261No hitNo description
CDDcd048732.18E-7195259No hitNo description
Gene3DG3DSA:3.30.70.2601.7E-4195261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MQHQHNVTTD AYINGARRRL RRRLTHPTRG PSTRPTDPFL LPPPPQQAAC AGLFGRRPSF  60
GYDGDHHLRF LTESLGQVVH PGGGGAPFGL HAELQKMTAQ EIMDAKALAA SKSHSEAERR  120
RRERINNHLA KLRSLLPSTT KTDKASLLAE VIQHVKELKR QTSLIAESSP VPTESDELTV  180
DKEADEEGRA VIKASICCED RSDLLPDLIN TLKALRLRTL KAEITTLGGR VKNVLFITGD  240
DESTTCDHHS IQDALKAVMD KTAEDSASGM SRGKEPISIS FNTGFEKVTG LFSSPPPRTV  300
YSSAAAAVRG SRRLWECI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11623RRRLRRRL
2117122ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574790.0KP257479.1 Salvia miltiorrhiza clone 46 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077316.11e-111transcription factor bHLH30
SwissprotQ9S7Y18e-87BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0H3YBS50.0A0A0H3YBS5_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009614307.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]