PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012083-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 230aa MW: 23463 Da PI: 8.4938

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012083-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.2	3.7e-38	21	80	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprC stntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGgg+rkn k+s SMil_00012083-RA_Salv 21 PEHLPCPRCSSTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPVGGGSRKNAKRS 80 57899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.8E-33	23	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.012	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-19	28	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MATDTAERKA ARSGQAPPPE PEHLPCPRCS STNTKFCYYN NYNFSQPRHF CKACRRYWTH 60 GGTLRDIPVG GGSRKNAKRS RSSAAAAGGG AFSPSPHHDF RGFPGGASQL LVPFAADHGG 120 AGAFSGDAKM CGSFTSLLNT QGAGLWALGG FGLGLGHGFE EVGFGLGRAV WPFPGVVEGG 180 PASGGGGGGG GASVAGNTWQ LESGESGYSN GDCFALPDLA ISTPGGNFMK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662922	5e-81	KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099306.1	1e-111	dof zinc finger protein DOF3.4
Swissprot	Q39088	4e-52	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A4D8ZYI2	1e-113	A0A4D8ZYI2_SALSN; Uncharacterized protein
STRING	Migut.H00486.1.p	1e-108	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	2e-29	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]