PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012147-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 151aa    MW: 16462.8 Da    PI: 10.263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012147-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.3e-20858256
                    AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                           +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  SMil_00012147-RA_Salv  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58
                           69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-32865IPR001471AP2/ERF domain
CDDcd000182.27E-29866No hitNo description
PfamPF008472.3E-13857IPR001471AP2/ERF domain
PROSITE profilePS5103222.721865IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22866IPR016177DNA-binding domain
SMARTSM003803.3E-35871IPR001471AP2/ERF domain
PRINTSPR003674.1E-11920IPR001471AP2/ERF domain
PRINTSPR003674.1E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MASTREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA  60
KTNFPAPPSG LSLDLNLPSD HRWIAPTGRL IINEFLHTGV LKDVAAAQAN GGPVITASVA  120
PVVDGDSPAK YFGIVRRGLP IDLNEPPPLW L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21865260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21865563ATERF1
3gcc_A2e-21865563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6237182e-55KJ623718.1 Pyrus x bretschneideri ethylene response factor 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096343.19e-91ethylene-responsive transcription factor 12
SwissprotQ94ID68e-48ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A2Z7CYR32e-88A0A2Z7CYR3_9LAMI; Ethylene-responsive transcription factor 12
STRINGMigut.M01117.1.p1e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-50ERF domain protein 12