PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012149-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 211aa    MW: 23174.3 Da    PI: 10.7441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012149-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-191767256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                           +++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++ a+++++g+
  SMil_00012149-RA_Salv 17 HFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDTAARQFRGH 67
                           69*******.**********83...36*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.74E-301674No hitNo description
SMARTSM003804.9E-391780IPR001471AP2/ERF domain
PROSITE profilePS5103223.8021774IPR001471AP2/ERF domain
PfamPF008475.9E-131767IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-221775IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-321774IPR001471AP2/ERF domain
PRINTSPR003674.1E-111829IPR001471AP2/ERF domain
PRINTSPR003674.1E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAPTAAGCRG AQDTNAHFRG VRKRPWGRYA AEIRDPAKKS RVWLGTFDTA EEAARAYDTA  60
ARQFRGHKAK TNFPPLQSHT KKPDRSPSQS STVESSSRET FPIPDSKLLQ LTLGRRPMRF  120
PFGYLRPAAP VSAAGFLPLQ NTMLHLRPES RQEIIQVMNE MRRPPADFLL CAGGGTAQSE  180
SDSSSAVVDL PKSPPGRGIN LDLNLPPPET I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-22774472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553968.11e-81ethylene-responsive transcription factor 4-like
TrEMBLA0A2Z7CXV55e-63A0A2Z7CXV5_9LAMI; Uncharacterized protein
STRINGXP_009618542.15e-50(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000587513e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-25erf domain protein 9