PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012162-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 255aa MW: 29222.8 Da PI: 6.3205

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012162-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.6	5.1e-29	89	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+r+etr+gC+a++ v+k ++gkw vtk+++eH+H+l SMil_00012162-RA_Salv 89 FYNSYATRVGFVIRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KIVRQRVETRVGCRAMILVRKVSSGKWTVTKFVKEHTHPL 174 ****************************************9988..9************************************9 PP FAR1 90 ap 91 +p SMil_00012162-RA_Salv 175 TP 176 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-26	89	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDYEINGDVN GEVVGSSTNY EGRTDDDDTI VGSSADGVLQ HGLDIKVDED SSERDLFQLD 60 ELQDVNCVTP IDEPYVGQEF ESEAAAHAFY NSYATRVGFV IRVSKLSRSR RDGTAIGRAL 120 VCNKEGFRMP DKREKIVRQR VETRVGCRAM ILVRKVSSGK WTVTKFVKEH THPLTPGKGR 180 RDLIYDQYPN EHDKIRELSQ QLAIEKKKVA TYKRHLEMIF EHIEEHNQSL GKKIQNIMNS 240 VREMETKDQL DPRFC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098324.1	1e-172	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2G9HZ25	1e-165	A0A2G9HZ25_9LAMI; Uncharacterized protein
STRING	Migut.H01929.1.p	1e-152	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-101	FAR1 family protein