PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012223-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 308aa    MW: 33761.7 Da    PI: 7.7647
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012223-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.81.6e-1992178186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            +W++  + +L+ea++e+  +l+rg+l++ +Weev++ +  r +  ++s +qCk+k +nl+kryk ++++ +++   s+s++p+f+q+e
  SMil_00012223-RA_Salv  92 EWSDTAIACLLEAYSEKFVQLNRGNLRGRDWEEVAAMVseRCENQSKSVEQCKNKVDNLKKRYKLERHRLNNG-GVSTSHWPWFKQME 178
                            5*************************************666677899************************99.667779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-2290180No hitNo description
SMARTSM005950.0011100186IPR006578MADF domain
Gene3DG3DSA:3.40.1160.101.2E-13227307IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536334.06E-9235291IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
LTPSMAACDD DFSLLDDPQN PNSAPPSTAT ASQTPPYQIN PYEHDSDPFD SDPNSLSAKR  60
VADRDDIHSG TSKRTRLPSS ASAGDYRKDR EEWSDTAIAC LLEAYSEKFV QLNRGNLRGR  120
DWEEVAAMVS ERCENQSKSV EQCKNKVDNL KKRYKLERHR LNNGGVSTSH WPWFKQMEQI  180
VGNSIAAKAA AEEEKSSGVG GASYSTRQTK RLGTMVNSPG SQINSVKLKP SNNLRWRRVV  240
LKISGAALAG SAPNNIEPKV AMLIAREVSI ACHVGVEVAI VVGGRNFFCG DAWVEQTGLD  300
RCTAYQIG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101478.10.0uncharacterized protein LOC105179524
TrEMBLA0A4D8YX160.0A0A4D8YX16_SALSN; Uridylate kinase
STRINGMigut.L01743.1.p1e-179(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-108Trihelix family protein