PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012296-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 213aa MW: 25227.5 Da PI: 5.7138

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012296-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.7	7.6e-43	5	134	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +GfrF Pt+eel+++yL kk++g + ++++vi+ ++iy++ Pw+Lp+ +++++++w+fF+ ++++a+g r+nr t++gyWkat SMil_00012296-RA_Salv 5 VGFRFYPTEEELLCYYLPKKLNGPTPHIDRVIPLLRIYDYSPWELPQfageVCRGDREQWFFFTAMQEREARGGRTNRLTQNGYWKAT 92 7*************************999***********656754455777************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +v+++++ +g kkt+vfy+grap+g+kt+W m+ey+l SMil_00012296-RA_Salv 93 GSPCDVFDRRNLRIGRKKTMVFYEGRAPHGSKTTWKMNEYKL 134 **************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	46.207	3	155	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-46	4	155	IPR003441	NAC domain
Pfam	PF02365	1.1E-21	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MEEHVGFRFY PTEEELLCYY LPKKLNGPTP HIDRVIPLLR IYDYSPWELP QFAGEVCRGD 60 REQWFFFTAM QEREARGGRT NRLTQNGYWK ATGSPCDVFD RRNLRIGRKK TMVFYEGRAP 120 HGSKTTWKMN EYKLYHQSSI SQLREELSLC RIYKKSEIVR AFDRRPPAEE AAVTAIPNPT 180 AVENHEFDWD MATDEIESLE DSDIQMLLNW FDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-30	6	155	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-30	6	155	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-30	6	155	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-30	6	155	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	8e-30	6	155	23	168	NAC domain-containing protein 19
3swm_B	8e-30	6	155	23	168	NAC domain-containing protein 19
3swm_C	8e-30	6	155	23	168	NAC domain-containing protein 19
3swm_D	8e-30	6	155	23	168	NAC domain-containing protein 19
3swp_A	8e-30	6	155	23	168	NAC domain-containing protein 19
3swp_B	8e-30	6	155	23	168	NAC domain-containing protein 19
3swp_C	8e-30	6	155	23	168	NAC domain-containing protein 19
3swp_D	8e-30	6	155	23	168	NAC domain-containing protein 19
4dul_A	7e-30	6	155	20	165	NAC domain-containing protein 19
4dul_B	7e-30	6	155	20	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022889463.1	1e-74	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	8e-62	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A4D9APP5	1e-108	A0A4D9APP5_SALSN; Uncharacterized protein
STRING	Solyc11g068620.1.1	2e-69	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	2e-66	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]