PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012297-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 229aa    MW: 25657 Da    PI: 9.6791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012297-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.91.2e-33231431128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrF+Ptd+e+v +yL++k+ +++l++ +vi+e+d++ ++P++Lp     +e++ yfF +r+ ++    +  r  + g+Wk tg+
  SMil_00012297-RA_Salv  23 LPPGFRFQPTDQEIVFQYLARKIFSSPLPA-SVIPELDVFAFHPSNLP---GDSERDRYFFGSREVNHG---NVGRG-SGGFWKVTGS 102
                            79****************************.99***************...3467899*****988765...46664.57******** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+++++ +   vg+++tLvfy+g++p++++tdW++h y +
  SMil_00012297-RA_Salv 103 DKRIVCSkRMPIVGIRRTLVFYQGKHPRAVRTDWFVHVYCI 143
                            ****99734456*************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-4119170IPR003441NAC domain
PROSITE profilePS5100542.01223170IPR003441NAC domain
PfamPF023653.4E-1724142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAMQVNYHNM NKFNFIRDGA SKLPPGFRFQ PTDQEIVFQY LARKIFSSPL PASVIPELDV  60
FAFHPSNLPG DSERDRYFFG SREVNHGNVG RGSGGFWKVT GSDKRIVCSK RMPIVGIRRT  120
LVFYQGKHPR AVRTDWFVHV YCIALSQNNR LSQGGLNQIG KWVLCHVFSK KRGLKDEVCR  180
QQRYDRFATP EMSDVDSCSS SSSSSASDSS VLSEVSSTSA DDCAASARP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-322317115169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073111.13e-91NAC domain-containing protein 83
SwissprotQ9FY933e-50NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A4D8Y7E84e-95A0A4D8Y7E8_SALSN; Uncharacterized protein
TrEMBLA0A4D9C4716e-95A0A4D9C471_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000110694e-66(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-52NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]