PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012348-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 226aa    MW: 25409.7 Da    PI: 7.5797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012348-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012626323
                           ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                           C+ C k+Fs+   L  H+r+H
  SMil_00012348-RA_Salv  6 CKLCFKRFSNGKALGAHMRSH 26
                           ********************9 PP
2zf-C2H214.50.00011122144123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C+k+F+++  L +H  +H
  SMil_00012348-RA_Salv 122 HRCEKCHKVFKSSQGLGSHKASH 144
                            79*****************9998 PP
3zf-C2H211.20.0012176198123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C  C++ F++   L  H r+H
  SMil_00012348-RA_Salv 176 HECALCPRIFKSAQALGGHKRSH 198
                            78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.097431IPR007087Zinc finger, C2H2
SMARTSM003553426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.4E-8626No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139123.7E-6628IPR007087Zinc finger, C2H2
SuperFamilySSF576672.4E-8117144No hitNo description
PROSITE profilePS501579.328122144IPR007087Zinc finger, C2H2
SMARTSM003550.13122144IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-6122144IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576673.68E-5172200No hitNo description
PfamPF139121.4E-7175198IPR007087Zinc finger, C2H2
SMARTSM003550.27176198IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203176198IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGSMDCKLCF KRFSNGKALG AHMRSHYAIL PLPPKPHELT DDKSATYSLR ENPKKSSRLP  60
DPDLLDVHSD SPRFKRPRGD DQEEEVTKAE LEMEEGDVAL CLIMLSRDVW RNNSDDSSKK  120
IHRCEKCHKV FKSSQGLGSH KASHFKRIRN SLQEREGEGE GEGEGEERES VGDQVHECAL  180
CPRIFKSAQA LGGHKRSHFP APKFRRNLVD LNLPAAVGVV NEEILA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550028.12e-62zinc finger protein ZAT1
TrEMBLA0A4D8Z4M92e-84A0A4D8Z4M9_SALSN; Uncharacterized protein
STRINGMigut.A00957.1.p2e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-32C2H2-like zinc finger protein