PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012393-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 241aa MW: 28113.5 Da PI: 6.3074

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012393-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	141.3	5.5e-44	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +p+GfrF Pt+eel+++yL++k++g + ++++vi+ v+iy+++PwdLp+ +++++++w+fF+ ++++a+g r+nr t++gyWk SMil_00012393-RA_Salv 4 MPVGFRFYPTEEELLSYYLHHKLSGMNPDIDRVIPLVNIYDYNPWDLPQfageVCRGDREQWFFFTAMQEREARGGRTNRLTQNGYWK 91 699*************************99************656754455777************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+ +v++ ++ g kkt+vfy+grap+g+kt+W m+ey+l SMil_00012393-RA_Salv 92 ATGSPCDVFTCQNLRLGKKKTMVFYEGRAPHGSKTTWKMNEYKL 135 ******99999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-48	2	159	IPR003441	NAC domain
PROSITE profile	PS51005	48.53	4	159	IPR003441	NAC domain
Pfam	PF02365	7.5E-22	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MVDMPVGFRF YPTEEELLSY YLHHKLSGMN PDIDRVIPLV NIYDYNPWDL PQFAGEVCRG 60 DREQWFFFTA MQEREARGGR TNRLTQNGYW KATGSPCDVF TCQNLRLGKK KTMVFYEGRA 120 PHGSKTTWKM NEYKLYHQSS AAASPQLKEE LSLCRIYKRS KCARPFDRRP PAEAPAAHDE 180 AARQYYDDHH HRSIADVAVA SNDNQQNPAV GTEFTNWDMQ TQTEPLWDSE DLLMILNWFD 240 L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-35	2	164	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-35	2	164	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-35	2	164	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-35	2	164	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-34	2	164	18	173	NAC domain-containing protein 19
3swm_B	1e-34	2	164	18	173	NAC domain-containing protein 19
3swm_C	1e-34	2	164	18	173	NAC domain-containing protein 19
3swm_D	1e-34	2	164	18	173	NAC domain-containing protein 19
3swp_A	1e-34	2	164	18	173	NAC domain-containing protein 19
3swp_B	1e-34	2	164	18	173	NAC domain-containing protein 19
3swp_C	1e-34	2	164	18	173	NAC domain-containing protein 19
3swp_D	1e-34	2	164	18	173	NAC domain-containing protein 19
4dul_A	9e-35	2	164	15	170	NAC domain-containing protein 19
4dul_B	9e-35	2	164	15	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077925.1	2e-88	NAC domain-containing protein 90-like
TrEMBL	A0A4D8Z4J0	1e-126	A0A4D8Z4J0_SALSN; Uncharacterized protein
STRING	XP_010271606.1	2e-80	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-64	NAC domain containing protein 61