PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012415-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 306aa    MW: 34961.7 Da    PI: 7.9457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012415-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-13103150148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+W++eEd +l  ++ ++G  +W++ ++  g+ R++k+c++rw +yl
  SMil_00012415-RA_Salv 103 KGAWSEEEDNKLRSYILRYGHWNWRLLPKFAGLARCGKSCRLRWVNYL 150
                            79******************99************************97 PP
2Myb_DNA-binding43.85.8e-14156201148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg +T eE+ l+++++ +lG++ W++ a+ ++ gRt++++k++w+++l
  SMil_00012415-RA_Salv 156 RGGFTIEEENLIAKLHDELGNK-WSAMAAIIP-GRTDNEIKNFWHTHL 201
                            7889******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-2195153IPR009057Homeodomain-like
PROSITE profilePS5129414.3598150IPR017930Myb domain
SuperFamilySSF466891.37E-27100197IPR009057Homeodomain-like
SMARTSM007171.6E-9102152IPR001005SANT/Myb domain
PfamPF002491.5E-12103150IPR001005SANT/Myb domain
CDDcd001671.08E-7105150No hitNo description
PROSITE profilePS5129421.35151205IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-23154204IPR009057Homeodomain-like
SMARTSM007177.7E-12155203IPR001005SANT/Myb domain
PfamPF002494.7E-13156201IPR001005SANT/Myb domain
CDDcd001671.17E-7159201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MASSILQLSF FNDCAHRPTL QPLRLPAVGV EFKFLILFSS SELAGLWCYI RRDEVVLPLG  60
KIRQTEEHYR GDNLLAERDS SRLDFLERET MRKPSVDKNG VKKGAWSEEE DNKLRSYILR  120
YGHWNWRLLP KFAGLARCGK SCRLRWVNYL KPGLKRGGFT IEEENLIAKL HDELGNKWSA  180
MAAIIPGRTD NEIKNFWHTH LKKRSKKVPA APASPSPSPS ESKGCEKVIL ESSRGVVWDS  240
EESGGEAEKG ESPIQVEFNE RGSGTRLLDG FLDSFWTHPF LVDTSYTHHH SFSAFMDQED  300
AIYLFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-231032047107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594260.0KF059426.1 Salvia miltiorrhiza MYB-related transcription factor (MYB72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027127259.13e-70transcription factor MYB15-like
TrEMBLA0A059PRS91e-158A0A059PRS9_SALMI; MYB-related transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12820.14e-50myb domain protein 10