PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012440-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 147aa    MW: 16244.1 Da    PI: 4.9039
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012440-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.61.2e-16956249
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            i+++ +r++tf+kRr+g++KKA E + L d  +a++ifss+ + y +
  SMil_00012440-RA_Salv  9 LIDDDAKRHTTFTKRRHGLIKKADEFCRLSDSTAALLIFSSSKNCYAF 56
                           699**************************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.002160IPR002100Transcription factor, MADS-box
CDDcd002663.24E-22168No hitNo description
SMARTSM004321.0E-18159IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-13222IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-21282IPR002100Transcription factor, MADS-box
PfamPF003195.3E-161056IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-132237IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-133758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MRRSIEIKLI DDDAKRHTTF TKRRHGLIKK ADEFCRLSDS TAALLIFSSS KNCYAFGHPE  60
VDSVLDRYDA ADSSSATGAV WEEVEAVTEM ESRIGNAVET GRWEEAVRGL GLDAFDQLTA  120
ELEKFRRQVA ALQTKFAAAP AEETGGS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-20AGAMOUS-like 61