PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012548-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 186aa    MW: 21185 Da    PI: 8.4043
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012548-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-203486456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           + ++++eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
  SMil_00012548-RA_Salv 34 KKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 86
                           55699***********************************************9 PP
2HD-ZIP_I/II122.52e-3933123292
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            kk+rls+eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k kqlE+ y+aLk+++da+++e+++L++ev +Lr+
  SMil_00012548-RA_Salv  33 KKKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEFDAVSREKHKLHQEVLALRA 120
                            9**************************************************************************************8 PP

            HD-ZIP_I/II  90 elk 92 
                             lk
  SMil_00012548-RA_Salv 121 ILK 123
                            876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-21688IPR009057Homeodomain-like
SuperFamilySSF466899.41E-201889IPR009057Homeodomain-like
PROSITE profilePS5007117.0382888IPR001356Homeobox domain
SMARTSM003893.5E-183192IPR001356Homeobox domain
CDDcd000861.24E-163389No hitNo description
PfamPF000462.0E-173486IPR001356Homeobox domain
PRINTSPR000314.9E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000314.9E-66884IPR000047Helix-turn-helix motif
PfamPF021839.5E-888122IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MIYSGMEMKQ AMVAEKSNSN SSMSINYGGG DPKKKRLSTE QLESLENSFQ EEIKLDPDRK  60
MKLAKELGLQ PRQIAVWFQN RRARWKGKQL ERLYDALKQE FDAVSREKHK LHQEVLALRA  120
ILKDQVAKKQ VSTDVSGEET VESTSIPSSE KGRGEGNNQM GECNYVLNVE DYSPLIMTPY  180
NWGALP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18088RRARWKGKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.11e-91putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR06e-49ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A4D9C6201e-105A0A4D9C620_SALSN; Homeobox-leucine zipper protein
STRINGMigut.J00491.1.p3e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-51homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]